[HTML][HTML] Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance

…, KV Thomas, J Tynan, S Toze, J Thompson… - Science of the Total …, 2022 - Elsevier
Wastewater surveillance for pathogens using reverse transcription-polymerase chain reaction
(RT-PCR) is an effective and resource-efficient tool for gathering community-level public …

RTK mutations and human syndromes: when good receptors turn bad

SC Robertson, JA Tynan, DJ Donoghue - Trends in Genetics, 2000 - cell.com
Mutations in receptor tyrosine kinases (RTKs) have been linked to an increasing number of
inherited human disease syndromes, including dwarfism, craniosynostosis, heritable cancer …

Noninvasive detection of fetal trisomy 21 by sequencing of DNA in maternal blood: a study in a clinical setting

M Ehrich, C Deciu, T Zwiefelhofer, JA Tynan… - American journal of …, 2011 - Elsevier
OBJECTIVE: We sought to evaluate a multiplexed massively parallel shotgun sequencing
assay for noninvasive trisomy 21 detection using circulating cell-free fetal DNA. STUDY …

Transformation and Stat activation by derivatives of FGFR1, FGFR3, and FGFR4

…, SC Robertson, MY Kanemitsu, AN Meyer, JA Tynan… - Oncogene, 2000 - nature.com
The fibroblast growth factor receptor (FGFR) family members mediate a number of important
cellular processes, and are mutated or overexpressed in several forms of human cancer. …

Noninvasive prenatal detection of sex chromosomal aneuploidies by sequencing circulating cell‐free DNA from maternal plasma

…, P Oeth, H Wang, T Jensen, J Tynan… - Prenatal …, 2013 - Wiley Online Library
Objective Whole‐genome sequencing of circulating cell free (ccf) DNA from maternal
plasma has enabled noninvasive prenatal testing for common autosomal aneuploidies. The …

Determination of fetal DNA fraction from the plasma of pregnant women using sequence read counts

SK Kim, G Hannum, J Geis, J Tynan, G Hogg… - Prenatal …, 2015 - Wiley Online Library
Objective This study introduces a novel method, referred to as SeqFF, for estimating the fetal
DNA fraction in the plasma of pregnant women and to infer the underlying mechanism that …

[HTML][HTML] Horizons in veterinary precision oncology: fundamentals of cancer genomics and applications of liquid biopsy for the detection, characterization, and …

…, F Clemente-Vicario, I Chorny, JA Tynan… - Frontiers in Veterinary …, 2021 - frontiersin.org
Cancer is the leading cause of death in dogs, in part because many cases are identified at
an advanced stage when clinical signs have developed, and prognosis is poor. Increased …

Detection of fetal subchromosomal abnormalities by sequencing circulating cell-free DNA from maternal plasma

C Zhao, J Tynan, M Ehrich, G Hannum… - Clinical …, 2015 - academic.oup.com
BACKGROUND The development of sequencing-based noninvasive prenatal testing (NIPT)
has been largely focused on whole-chromosome aneuploidies (chromosomes 13, 18, 21, X, …

[HTML][HTML] Detection of the Omicron (B. 1.1. 529) variant of SARS-CoV-2 in aircraft wastewater

…, W Tian, H Wang, L Yang, PM Bertsch, J Tynan… - Science of The Total …, 2022 - Elsevier
On the 26th of November 2021, the World Health Organization (WHO) designated the newly
detected B.1.1.529 lineage of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-…

[HTML][HTML] Clinical validation of a noninvasive prenatal test for genomewide detection of fetal copy number variants

RB Lefkowitz, JA Tynan, T Liu, Y Wu… - American journal of …, 2016 - Elsevier
… Libraries were prepared and quantified as described by Tynan et al. To reduce noise and
increase signal, sequencing depth for this analysis was increased to target 32 million reads …