[HTML][HTML] Towards complete and error-free genome assemblies of all vertebrate species
High-quality and complete reference genome assemblies are fundamental for the application
of genomics to biology, disease, and biodiversity conservation. However, such assemblies …
of genomics to biology, disease, and biodiversity conservation. However, such assemblies …
Whole-genome analyses resolve early branches in the tree of life of modern birds
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Single-molecule sequencing instruments can generate multikilobase sequences with the
potential to greatly improve genome and transcriptome assembly. However, the error rates of …
potential to greatly improve genome and transcriptome assembly. However, the error rates of …
Comparative genomics reveals insights into avian genome evolution and adaptation
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across
many research fields. We explored bird macroevolution using full genomes from 48 avian …
many research fields. We explored bird macroevolution using full genomes from 48 avian …
[HTML][HTML] The genome of a songbird
The zebra finch is an important model organism in several fields 1 , 2 with unique relevance
to human neuroscience 3 , 4 . Like other songbirds, the zebra finch communicates through …
to human neuroscience 3 , 4 . Like other songbirds, the zebra finch communicates through …
An 80-tile sub-100-w teraflops processor in 65-nm cmos
SR Vangal, J Howard, G Ruhl, S Dighe… - IEEE Journal of solid …, 2008 - ieeexplore.ieee.org
This paper describes an integrated network-on-chip architecture containing 80 tiles arranged
as an 8x10 2-D array of floating-point cores and packet-switched routers, both designed to …
as an 8x10 2-D array of floating-point cores and packet-switched routers, both designed to …
An 80-tile 1.28 TFLOPS network-on-chip in 65nm CMOS
S Vangal, J Howard, G Ruhl, S Dighe… - … Solid-State Circuits …, 2007 - ieeexplore.ieee.org
A 275mm 2 network-on-chip architecture contains 80 tiles arranged as a 10 times 8 2D array
of floating-point cores and packet-switched routers, operating at 4GHz. The 15-F04 design …
of floating-point cores and packet-switched routers, operating at 4GHz. The 15-F04 design …
A 48-core IA-32 message-passing processor with DVFS in 45nm CMOS
J Howard, S Dighe, Y Hoskote, S Vangal… - … Solid-State Circuits …, 2010 - ieeexplore.ieee.org
A 567 mm 2 processor on 45 nm CMOS integrates 48 IA-32 cores and 4 DDR3 channels in
a 6×4 2D-mesh network. Cores communicate through message passing using 384 KB of on-…
a 6×4 2D-mesh network. Cores communicate through message passing using 384 KB of on-…
Voltage-dependent ordering of water molecules at an electrode–electrolyte interface
MF Toney, JN Howard, J Richer, GL Borges… - Nature, 1994 - nature.com
THE arrangement of water molecules at charged, aqueous interfaces is an important question
in electrochemistry, geochemistry and biology. Theoretical studies 1–11 suggest that the …
in electrochemistry, geochemistry and biology. Theoretical studies 1–11 suggest that the …
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …
cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished …